A systemic proteomic analysis of Populus chloroplast by using shotgun method.
Identifieur interne : 003010 ( Main/Exploration ); précédent : 003009; suivant : 003011A systemic proteomic analysis of Populus chloroplast by using shotgun method.
Auteurs : Hong-Mei Yuan [République populaire de Chine] ; Kai-Long Li ; Rui-Juan Ni ; Wen-Dong Guo ; Zhuo Shen ; Chuan-Ping Yang ; Bai-Chen Wang ; Gui-Feng Liu ; Chang-Hong Guo ; Jing JiangSource :
- Molecular biology reports [ 1573-4978 ] ; 2011.
Descripteurs français
- KwdFr :
- Bases de données factuelles (MeSH), Chloroplastes (composition chimique), Chromatographie en phase liquide (méthodes), Données de séquences moléculaires (MeSH), Populus (composition chimique), Populus (cytologie), Protéines végétales (analyse), Protéome (analyse), Protéomique (méthodes), Spectrométrie de masse en tandem (méthodes), Tests de criblage à haut débit (méthodes).
- MESH :
- analyse : Protéines végétales, Protéome.
- composition chimique : Chloroplastes, Populus.
- cytologie : Populus.
- méthodes : Chromatographie en phase liquide, Protéomique, Spectrométrie de masse en tandem, Tests de criblage à haut débit.
- Bases de données factuelles, Données de séquences moléculaires.
English descriptors
- KwdEn :
- Chloroplasts (chemistry), Chromatography, Liquid (methods), Databases, Factual (MeSH), High-Throughput Screening Assays (methods), Molecular Sequence Data (MeSH), Plant Proteins (analysis), Populus (chemistry), Populus (cytology), Proteome (analysis), Proteomics (methods), Tandem Mass Spectrometry (methods).
- MESH :
- chemical , analysis : Plant Proteins, Proteome.
- chemistry : Chloroplasts, Populus.
- cytology : Populus.
- methods : Chromatography, Liquid, High-Throughput Screening Assays, Proteomics, Tandem Mass Spectrometry.
- Databases, Factual, Molecular Sequence Data.
Abstract
The chloroplast is one of the most important organelles in plants. Proteomic investigations of chloroplasts have been undertaken for many herb plant species, but to date no such investigation has been reported for woody plant chloroplasts. In the present study we initiated a systematic proteomic study of Populus chloroplasts using a shotgun proteomic method. After isolation of chloroplasts and tryptic digestion of the proteins, the protein fragments were separated via HPLC using an SCX column, and the peptides were analyzed by LC-MS/MS; 119 proteins were successfully identified. Based on annotation information in the UniProtKB/Swiss-Prot database, these proteins were identified as being localized in the chloroplast thylakoid membrane, chloroplast stroma, chloroplast thylakoid lumen, and plastoglobules. Over 50% of all identified proteins were confirmed as chloroplast thylakoid proteins, and 85 are encoded by the chloroplast genome with the remaining proteins encoded by the nuclear genome. Based on functional annotation, these proteins were classified into four functional categories, including photosynthesis, redox regulation and stress, primary and secondary metabolism, transport and signaling. These data provide a valuable basis for further studies on photosynthesis in poplar species.
DOI: 10.1007/s11033-010-9971-y
PubMed: 20135232
Affiliations:
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C" first="Chuan-Ping" last="Yang">Chuan-Ping Yang</name></author><author><name sortKey="Wang, Bai Chen" sort="Wang, Bai Chen" uniqKey="Wang B" first="Bai-Chen" last="Wang">Bai-Chen Wang</name></author><author><name sortKey="Liu, Gui Feng" sort="Liu, Gui Feng" uniqKey="Liu G" first="Gui-Feng" last="Liu">Gui-Feng Liu</name></author><author><name sortKey="Guo, Chang Hong" sort="Guo, Chang Hong" uniqKey="Guo C" first="Chang-Hong" last="Guo">Chang-Hong Guo</name></author><author><name sortKey="Jiang, Jing" sort="Jiang, Jing" uniqKey="Jiang J" first="Jing" last="Jiang">Jing Jiang</name></author></analytic><series><title level="j">Molecular biology reports</title><idno type="eISSN">1573-4978</idno><imprint><date when="2011" type="published">2011</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Chloroplasts (chemistry)</term><term>Chromatography, Liquid (methods)</term><term>Databases, Factual (MeSH)</term><term>High-Throughput Screening Assays (methods)</term><term>Molecular Sequence Data (MeSH)</term><term>Plant Proteins (analysis)</term><term>Populus (chemistry)</term><term>Populus (cytology)</term><term>Proteome (analysis)</term><term>Proteomics (methods)</term><term>Tandem Mass Spectrometry (methods)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Bases de données factuelles (MeSH)</term><term>Chloroplastes (composition chimique)</term><term>Chromatographie en phase liquide (méthodes)</term><term>Données de séquences moléculaires (MeSH)</term><term>Populus (composition chimique)</term><term>Populus (cytologie)</term><term>Protéines végétales (analyse)</term><term>Protéome (analyse)</term><term>Protéomique (méthodes)</term><term>Spectrométrie de masse en tandem (méthodes)</term><term>Tests de criblage à haut débit (méthodes)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="analysis" xml:lang="en"><term>Plant Proteins</term><term>Proteome</term></keywords><keywords scheme="MESH" qualifier="analyse" xml:lang="fr"><term>Protéines végétales</term><term>Protéome</term></keywords><keywords scheme="MESH" qualifier="chemistry" xml:lang="en"><term>Chloroplasts</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>Chloroplastes</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="cytologie" xml:lang="fr"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="cytology" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Chromatography, Liquid</term><term>High-Throughput Screening Assays</term><term>Proteomics</term><term>Tandem Mass Spectrometry</term></keywords><keywords scheme="MESH" qualifier="méthodes" xml:lang="fr"><term>Chromatographie en phase liquide</term><term>Protéomique</term><term>Spectrométrie de masse en tandem</term><term>Tests de criblage 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Proteomic investigations of chloroplasts have been undertaken for many herb plant species, but to date no such investigation has been reported for woody plant chloroplasts. In the present study we initiated a systematic proteomic study of Populus chloroplasts using a shotgun proteomic method. After isolation of chloroplasts and tryptic digestion of the proteins, the protein fragments were separated via HPLC using an SCX column, and the peptides were analyzed by LC-MS/MS; 119 proteins were successfully identified. Based on annotation information in the UniProtKB/Swiss-Prot database, these proteins were identified as being localized in the chloroplast thylakoid membrane, chloroplast stroma, chloroplast thylakoid lumen, and plastoglobules. Over 50% of all identified proteins were confirmed as chloroplast thylakoid proteins, and 85 are encoded by the chloroplast genome with the remaining proteins encoded by the nuclear genome. Based on functional annotation, these proteins were classified into four functional categories, including photosynthesis, redox regulation and stress, primary and secondary metabolism, transport and signaling. These data provide a valuable basis for further studies on photosynthesis in poplar species.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">20135232</PMID><DateCompleted><Year>2011</Year><Month>10</Month><Day>21</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1573-4978</ISSN><JournalIssue CitedMedium="Internet"><Volume>38</Volume><Issue>5</Issue><PubDate><Year>2011</Year><Month>Jun</Month></PubDate></JournalIssue><Title>Molecular biology reports</Title><ISOAbbreviation>Mol Biol Rep</ISOAbbreviation></Journal><ArticleTitle>A systemic proteomic analysis of Populus chloroplast by using shotgun method.</ArticleTitle><Pagination><MedlinePgn>3045-54</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s11033-010-9971-y</ELocationID><Abstract><AbstractText>The chloroplast is one of the most important organelles in plants. Proteomic investigations of chloroplasts have been undertaken for many herb plant species, but to date no such investigation has been reported for woody plant chloroplasts. In the present study we initiated a systematic proteomic study of Populus chloroplasts using a shotgun proteomic method. After isolation of chloroplasts and tryptic digestion of the proteins, the protein fragments were separated via HPLC using an SCX column, and the peptides were analyzed by LC-MS/MS; 119 proteins were successfully identified. Based on annotation information in the UniProtKB/Swiss-Prot database, these proteins were identified as being localized in the chloroplast thylakoid membrane, chloroplast stroma, chloroplast thylakoid lumen, and plastoglobules. Over 50% of all identified proteins were confirmed as chloroplast thylakoid proteins, and 85 are encoded by the chloroplast genome with the remaining proteins encoded by the nuclear genome. Based on functional annotation, these proteins were classified into four functional categories, including photosynthesis, redox regulation and stress, primary and secondary metabolism, transport and signaling. These data provide a valuable basis for further studies on photosynthesis in poplar species.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Yuan</LastName><ForeName>Hong-Mei</ForeName><Initials>HM</Initials><AffiliationInfo><Affiliation>Key Laboratory of Forest Tree Genetic Improvement and Biotechnology, Ministry of Education, Northeast Forestry University, 26 Hexing Road, Harbin 150040, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Kai-Long</ForeName><Initials>KL</Initials></Author><Author ValidYN="Y"><LastName>Ni</LastName><ForeName>Rui-Juan</ForeName><Initials>RJ</Initials></Author><Author ValidYN="Y"><LastName>Guo</LastName><ForeName>Wen-Dong</ForeName><Initials>WD</Initials></Author><Author ValidYN="Y"><LastName>Shen</LastName><ForeName>Zhuo</ForeName><Initials>Z</Initials></Author><Author ValidYN="Y"><LastName>Yang</LastName><ForeName>Chuan-Ping</ForeName><Initials>CP</Initials></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Bai-Chen</ForeName><Initials>BC</Initials></Author><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Gui-Feng</ForeName><Initials>GF</Initials></Author><Author ValidYN="Y"><LastName>Guo</LastName><ForeName>Chang-Hong</ForeName><Initials>CH</Initials></Author><Author ValidYN="Y"><LastName>Jiang</LastName><ForeName>Jing</ForeName><Initials>J</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2010</Year><Month>02</Month><Day>05</Day></ArticleDate></Article><MedlineJournalInfo><Country>Netherlands</Country><MedlineTA>Mol Biol 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last="Jiang">Jing Jiang</name><name sortKey="Li, Kai Long" sort="Li, Kai Long" uniqKey="Li K" first="Kai-Long" last="Li">Kai-Long Li</name><name sortKey="Liu, Gui Feng" sort="Liu, Gui Feng" uniqKey="Liu G" first="Gui-Feng" last="Liu">Gui-Feng Liu</name><name sortKey="Ni, Rui Juan" sort="Ni, Rui Juan" uniqKey="Ni R" first="Rui-Juan" last="Ni">Rui-Juan Ni</name><name sortKey="Shen, Zhuo" sort="Shen, Zhuo" uniqKey="Shen Z" first="Zhuo" last="Shen">Zhuo Shen</name><name sortKey="Wang, Bai Chen" sort="Wang, Bai Chen" uniqKey="Wang B" first="Bai-Chen" last="Wang">Bai-Chen Wang</name><name sortKey="Yang, Chuan Ping" sort="Yang, Chuan Ping" uniqKey="Yang C" first="Chuan-Ping" last="Yang">Chuan-Ping Yang</name></noCountry><country name="République populaire de Chine"><noRegion><name sortKey="Yuan, Hong Mei" sort="Yuan, Hong Mei" uniqKey="Yuan H" first="Hong-Mei" last="Yuan">Hong-Mei Yuan</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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